Bio2BEL WikiPathways¶
Manager¶
Database Manager and useful query methods.
Command Line Interface¶
The command line interface allows you to communicate with the package and perform basic functions such as:
- Populate the database:
python3 -m bio2bel_wikipathways populate. By default the database is reset every time is populated. However, another optional parameter “–reset-db=False”, allows you to avoid the reset. More logging can be activated by added “-vv” or “-v” as an argument. - Drop the database:
python3 -m bio2bel_wikipathways drop. More logging can be activated by added “-vv” or “-v” as an argument. - Export gene sets as an excel file:
python3 -m bio2bel_wikipathways export.
Models¶
Database models.
Constants¶
This module contains all the constants used in this package.
Web¶
This module contains the web application to explore the database